Biology
Harris, Sarah A., Charles A. Laughton, and Tanniemola B. Liverpool.
"Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations."
Nucleic Acids Research 36.1 (2008): 21-29. External link to paper.
Lloyd, Sharon, Andrew Simpson, David Boyd, Dave Gavaghan et al..
"Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling."
Future Generation Computer Systems 23.3 (2007): 457-65. External link to paper.
Charlie Laughton
Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of / Conformers
Biophysical Society 10.1529/biophysj.106.097782.
Charlie Laughton
Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations
Nucleic Acids Research 10.1093/nar/gkm891
Chze Ling Wee
Membrane Insertion of a Voltage-Sensor Helix
Biophysical Journal 10.1016/j.bpj.2009.12.3532
Chze Ling Wee
Interactions Between a Voltage Sensor and a Toxin via Multiscale Simulations
Biophysical Journal 10.1016/j.bpj.2009.12.4321
Chze Ling Wee
Anion Translocation in a Brush-Like Nanopore: Simulations of the Outer Membrnae Protein OprP
Biophysical Journal 10.1016/j.bpj.2009.12.292
Gernot Plank
Evaluating Intramural Virtual Electrodes in the Myocardial Wedge Preparation: Simulations of Experimental Conditions
Biophysical Society 10.1529/biophysj.107.121343
Gernot Plank
Solvers for the Cardiac Bidomain Equations
Prog. Biophys. Mol. Biol., Focused Issue Cardiovascular Physiome 10.1016/j.pbiomolbio.2007.07.012
Gernot Plank
Algebraic Multigrid Preconditioner for the Cardiac Bidomain Model
IEEE Trans. Biomed. Eng. 10.1109/TBME.2006.889181
Gernot Plank
3-Dimensional Models of Individual Cardiac Histo-Anatomy: Tools and Challenges
Ann. N.Y. Acad. Sci. http://dx.doi.org/10.1196/annals.1380.023
Jean-Alain Grunchec
A web application to perform linkage disequilibrium and linkage analyses on a computational grid
Oxford Journals: Bioinformatics 10.1093/bioinformatics/btp171
Jean-Alain Grunchec
A web application to perform linkage disequilibrium and linkage analyses on a computational grid
Bioinformatics 10.1093/bioinformatics/btp171
Josh Berryman
Thermodynamic Description of Polymorphism in Q- and N-Rich Peptide Aggregates Revealed by Atomistic Simulation
Biophysical Journal 10.1016/j.bpj.2009.03.062
Karl Bates & William Sellers
Sensitivity analysis in evolutionary robotic simulations of bipedal dinosaur running
Journal of Vertebrate Paleontology 10.1080/02724630903409329
Maria Holstensson
Optimization of Energy-Window Settings for Scatter Correction in Quantitative 111In Imaging: Comparison of Measurements and Monte Carlo Simulations
Cancer Biotherapy & Radiopharmaceuticals 10.1089/cbr.2007.307
Philip Fowler
The Selectivity of K+ Ion Channels: Testing the Hypotheses
Biophysical Journal 10.1529/biophysj.108.132035
Philip Fowler
Insights into How Nucleotide-Binding Domains Power ABC Transport
Structure 10.1016/j.str.2009.07.009
Ranjit Vijayan
Computational approaches to ionotropic glutamate receptors in Molecular Simulations and Biomembranes
Biophysics to Function RSC ISBN: 978-0-85404-189-3
Ranjit Vijayan
Selectivity and cooperativity of modulatory ions in a neurotransmitter receptor
Biophysical Journal 10.1016/j.bpj.2008.11.039
Ranjit Vijayan
A steroid in a lipid bilayer: Localization, orientation and energetics
Biophysical Journal 0.1529/biophysj.108.140087
Ranjit Vijayan
Determination of pore-lining residues in the Hepatitis C virus p7 protein
Biophysical Journal 10.1016/j.bpj.2008.10.004
Ranjit Vijayan
Non-agonist binding subunit interfaces confer distinct functional signatures to the alternate stoichiometries of the α4β2 nicotinic receptor: an α4-α4 interface is required for Zn2+ potentiation
Journal of Neuroscience 10.1523/jneurosci.1228-08.2008
Ranjit Vijayan
Molecular basis of kainate receptor modulation by sodium
Neuron 10.1016/j.neuron.2008.04.001
Sanjay Kharche
A High Throughput Computing Approach to Cardiac Cell Analysis
All Hands meeting, Oxford
Sanjay Kharche
A Mathematical Model of Murine Sinoatrial Node Action Potential
Biophysical Journal Submitted
Sanjay Kharche
Stability of Scroll Excitation Waves in Human Atria during Fibrillation: A Computational Study.
Computing in Cardiology 10.1109/CIC.2007.4745477
Sanjay Kharche
Vulnerability in a one-dimensional transmural model of human ventricular tissue in heart failure
Computing in Cardiology
Sanjay Kharche
Simulation of Hypertrophy in Rat Left Ventricular Cells
Computing in Cardiology
Sanjay Kharche
Anti-arrythmogenic Effects of Atrial Specific Ultra Rapid Potassium Current Block: A Modelling Study
Computing in Cardiology
Sanjay Kharche
Functional Roles of Ionic Currents in A Mouse Sinoatrial Node Cell Model
Computing in Cardiology
Sanjay Kharche
Simulation of clinical electrophysiology in 3D human atria: a high-performance computing and high-performance visualization application
Concurrency and Computation: Practice and Experience 10.1002/cpe.1332
Sanjay Kharche
eScience simulation of clinical electrophysiology in 3D human atrium.
Concurrency and Computation: Practice and Experience 10.1002/cpe.1332
Sanjay Kharche
Viewing 0.3Tb Heart Simulation Data At Your Desk
EG UK Theory and Practice of Computer Graphics
Sanjay Kharche
Modelling changes in transmural propagation and susceptibility to arrhythmia induced by volatile anaesthetics in ventricular tissue.
Journal of Theoretical Biology 10.1016/j.jtbi.2008.12.004
Sanjay Kharche
Scroll Waves in 3D Virtual Human Atria: A Computational Study
Lecture Notes in Computer Science 10.1007/978-3-540-72907-5_14
Sanjay Kharche
A Global Sensitivity Index for Biophysically Detailed Cardiac Cell Models: A Computational Approach.
Lecture Notes In Computer Science 10.1007/978-3-642-01932-6_40
Sanjay Kharche
Remodelling of cellular excitation (reaction) and intercellular coupling (diffusion) by chronic atrial fibrillation represented by a reaction-diffusion system
Physica D: Nonlinear Phenomena 10.1016/j.physd.2008.06.012
Sanjay Kharche
Contribution of Kinetically Distinct HCN Isoforms to Murine Pacemaking: A Computational Study.
Proceedings of the Physiological Society
Sanjay Kharche
Functional Roles of Ionic Currents in A Membrane Delimited Mouse Sino-atrial Node Cell Model
Proceedings of the Physiological Society
Sanjay Kharche
Effects of atrial fibrillation on electrically heterogeneous human atria: a computer modelling study
Proceedings of the Physiological Society
Sanjay Kharche
Anti-arrythmogenic Effects of Atrial Specific IKur Block: A Modelling Study
Proceedings of the Physiological Society
Sanjay Kharche
A Systems Biology Computational Comparision of Two Caridac Pacemaker Cell Models
Proceedings of the Physiological Society
Sanjay Kharche
Repolarisation and vulnerability to re-entry in the human heart with short QT syndrome arising from KCNQ1 mutation--A simulation study
Progress in Biophysics and Molecular Biology 10.1016/j.pbiomolbio.2007.07.020
Sanjay Kharche
Atrial proarrhythmia due to increased inward rectifier current (I(K1)) arising from KCNJ2 mutation--a simulation study.
Progress in Biophysics and Molecular Biology 10.1016/j.pbiomolbio.2008.10.010
Ranjit Vijayan
A role for Leu118 of loop E in agonist binding to the α7 nicotinic acetylcholine receptor.
Molecular Pharmacology 10.1124/mol.107.041590
Ranjit Vijayan
Molecular basis of kainate receptor modulation by sodium
Neuron 10.1016/j.neuron.2008.04.001
Sanjay Kharche
Atrial proarrhythmia due to increased inward rectifier current (I(K1)) arising from KCNJ2 mutation--a simulation study.
Progress in Biophysics and Molecular Biology 10.1016/j.pbiomolbio.2008.10.010
Sanjay Kharche
Studying Ion Channel Dysfunction and Arrythmogenesis in the Human Atrium: A Computational Approach
Recent Advances in Biomedical Engineering ISBN 978-953-307-004-9
Sarah Harris
Stretched DNA Investigated Using Molecular-Dynamics and Quantum-Mechanical Calculations
Biophysical Journal 10.1016/j.bpj.2009.08.062
Sarah Harris
Molecular Dynamics Simulations of Duplex Stretching Reveal the Importance of Entropy in Determining the Biomechanical Properties of DNA
Biophysical Journal 10.1529/biophysj.104.046912
Sarah Harris
Thermodynamic Description of Polymorphism in Q- and N-Rich Peptide Aggregates Revealed by Atomistic Simulation
Biophysical Journal 10.1016/j.bpj.2009.03.062 |
Sanjay Kharche
Simulating the effects of atrial fibrillation induced electrical remodeling: A comprehensive simulation study
30th Annual International Conference of the IEEE Engineering in Medicine and Biological Society 10.1109/IEMBS.2008.4649222
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